UC Berkeley HHMI
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Bryan Clarkson

I use the budding yeast Saccaromyces cerevesiae to study mechanisms of translational regulation. As the rate-limiting step in the translation of a message, translation initiation is a well-characterized target of gene expression regulation. Sitting at the center of initiation is a large scaffolding protein, eIF4G, that serves to bring together a number of factors whose interactions are necessary for efficient translation. Interestingly, two isoforms of this protein are conserved across eukaryotes. Despite their central role in initiation, and some pre-existing biochemical data highlighting unique characteristics of the two isoforms, the specific role that each isoform plays in translational control remains a mystery. My work focuses on determining the contribution each isoform makes to the translation of the yeast genome, and on characterizing isoform specific regulatory mechanisms, with the intention of uncovering mechanisms of stress-induced translational repression and the subsequent selective translation of messages required for stress adaptation.

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